Publications

Google scholar

Please contact me for pdfs of any articles.

* Joint First Authors      Joint Final Authors

  1. Duntsch, L., Whibley, A., Brekke, P. Ewen, J.G. & Santure, A.W. (In press) Genomic data of different resolutions reveal consistent inbreeding estimates but contrasting homozygosity landscapes for a threatened species. Molecular Ecology https://doi.org/10.1111/mec.16068
  2. Lees, C.M., Rutschmann, A. Santure, A.W. & Beggs, J.R. (2021) Science-based, stakeholder-inclusive and participatory conservation planning helps reverse the decline of threatened species. Biological Conservation 260: 109194. https://doi.org/10.1016/j.biocon.2021.109194
  1. Duntsch, L., Tomotani, B.M., Villemereuil, P., Brekke, P., Lee, K.D., Ewen, J.G. & Santure A.W. (2020). Polygenic basis for adaptive morphological variation in a threatened Aotearoa | New Zealand bird, the hihi (Notiomystis cincta). Proceedings of the Royal Society B 287: 20200948. https://doi.org/10.1098/rspb.2020.0948
  1. Rutschmann, A., de Villemereuil, P, Brekke, P., Ewen, J.G., Anderson, N., & Santure, A.W. (2020) Consequences of space sharing on individual phenotypes in the New Zealand hihi. Evolutionary Ecology. https://doi.org/10.1007/s10682-020-10063-z
  1. Salloum, P. M., de Villemereuil, P., Santure, A.W., Waters, J.M. & Lavery, S.D. (2020) Hitchhiking consequences for genetic and morphological patterns: the influence of kelp rafting on a brooding chiton. Biological Journal of the Linnean Society 130: 756–770. https://doi.org/10.1093/biolinnean/blaa073
  1. Galla, S., Moraga, R., Brown, L., Cleland, S., Hoeppner, M.P., Maloney, R.F., Richardson, A., Slater, L., Santure, A.W. & Steeves, T.E. (2020) A comparison of pedigree, genetic, and genomic estimates of relatedness for informing pairing decisions in two critically endangered birds: Implications for conservation breeding programmes worldwide. Evolutionary Applications 13: 991-1008. https://doi.org/10.1111/eva.12916
  1. de Villemereuil, P., Rutschmann, A., Lee, K.D., Ewen, J.G., Brekke, P. & Santure, A.W. (2019) Little adaptive potential in a threatened passerine bird. Current Biology 29: 889-894. https://doi.org/10.1016/j.cub.2019.01.072
    Featured in a Current Biology Dispatch article: https://doi.org/10.1016/j.cub.2019.02.013
  1. de Villemereuil, P., Rutschmann, A., Ewen, J.G., Santure, A.W. & Brekke, P. (2019) Can threatened species adapt in a restored habitat? No expected evolutionary response in lay date for the New Zealand hihi. Evolutionary Applications 12: 482-497. https://doi.org/10.1111/eva.12727
  1. Galla, S.J.*, Forsdick, N.J. *, Brown, L., Hoeppner, M.P., Knapp, M., Maloney, R.F., Moraga, R., Santure, A.W., Steeves, T.E. (2019) Reference genomes from distantly related species can be used for genomic marker discovery to inform conservation management. Genes 10: 9. https://doi.org/10.3390/genes10010009
  1. Santure, A.W. & Garant, D. (2018) Wild GWAS – association mapping in natural populations. Molecular Ecology Resources 18: 729-738. https://doi.org/10.1111/1755-0998.12901
  1. Kim, J.-M., Santure, A.W., Barton, H.J., Quinn, J.L., Cole, E.F., Great Tit HapMap Consortium, Visser, M.E., Sheldon, B.C., Groenen, M.A.M., van Oers, K. & Slate, J. (2018) A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behavior. Molecular Ecology Resources 18: 877-891. https://doi.org/10.1111/1755-0998.12778
  1. Knight, A., Ewen, J.G., Brekke, P. & Santure, A.W. (2018) The evolutionary biology, ecology and epidemiology of coccidia of passerine birds. Advances in Parasitology 99: 35-60. https://doi.org/10.1016/bs.apar.2018.01.001
  1. Toth, C.A., Santure, A.W., Holwell, G.I., Pattemore, D. & Parsons, S. (2018) Courtship behaviour and display-site sharing appears conditional on body size in a lekking bat. Animal Behaviour 136: 13-19. https://doi.org/10.1016/j.anbehav.2017.12.007
  1. Stapley, J., Feulner, P.G.D., Johnston, S.E., Santure, A.W. & Smadja, C.M. (2017) Recombination: the good, the bad and the variable. Philosophical Transactions of the Royal Society B 372: 20170279. https://doi.org/10.1098/rstb.2017.0279
  1. Stapley, J., Feulner, P.G.D., Johnston, S.E., Santure, A.W. & Smadja, C.M. (2017) Variation in recombination frequency and distribution across eukaryotes: patterns and processes. Philosophical Transactions of the Royal Society B 372: 20160455. https://doi.org/10.1098/rstb.2016.0455

Stapley, J., Feulner, P.G.D., Johnston, S.E., Santure, A.W. & Smadja, C.M. (2017) Correction to ‘Variation in recombination frequency and distribution across eukaryotes: patterns and processes’. Philosophical Transactions of the Royal Society of London B 373: 20170360. https://doi.org/10.1098/rstb.2017.0360

  1. Radersma, R., Garroway, C.J., Santure, A.W., De Cauwer, I., Farine, D., Slate, J. & Sheldon, B.C. (2017) Social and spatial effects on genetic variation between foraging flocks in a wild bird population. Molecular Ecology 26: 5807-5819. https://doi.org/10.1111/mec.14291
  1. Patel, S.*, Thompson, K.F.*, Santure, A.W., Constantine, R. & Millar, C.D. (2017) Genetic kinship analyses reveal that Gray’s beaked whales strand in unrelated groups. Journal of Heredity 108: 456-461. https://doi.org/10.1093/jhered/esx021
  1. Galla, S., Buckley, T., Elshire, R., Hale, M., Knapp, M., McCallum, J., Moraga, R., Santure, A.W., Wilcox, P. & Steeves, T. (2016) Building strong relationships between conservation biology and primary industry leads to mutually-beneficial genomic advances. Molecular Ecology 25: 5267-5281. https://doi.org/10.1111/mec.13837
  1. Alcorn, M.R.*, Callander, D.C.*, Lopez-Santos, A.*, Torres Cleuren, Y., Birsoy, B., Joshi, P.M., Santure, A.W. & Rothman, J.H. (2016) Heterotaxy in Caenorhabditis: widespread natural variation in left-right arrangement of the major organs. Philosophical Transactions of the Royal Society B 371: 20150404. https://doi.org/10.1098/rstb.2015.0404
  1. Santure, A.W. (2016) An ecological model organism flies into the genomics era. Molecular Ecology Resources 16: 379-381. Invited Perspective. https://doi.org/10.1111/1755-0998.12491
  1. Santure, A.W., Poissant, J., De Cauwer, I., van Oers, K., Robinson, M.R., Quinn, J.L., Groenen, M.A.M., Visser, M.E., Sheldon, B.C. & Slate, J. (2015) Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations. Molecular Ecology 24: 6148-6162. https://doi.org/10.1038/hdy.2013.107
  1. Brekke, P., Ewen, J.G., Clucas, G. & Santure, A.W. (2015) Determinants of male floating behaviour and floater reproduction in a threatened population of the hihi (Notiomystis cincta). Evolutionary Applications 8: 796-806. https://doi.org/10.1111/eva.12287
  1. Firth, J.A., Hadfield, J.D., Santure, A.W., Slate, J. & Sheldon, B.C. (2015) The influence of non-random extra-pair paternity on heritability estimates derived from wild pedigrees. Evolution 69: 1336-1344. https://doi.org/10.1111/evo.12649
  1. Sepil, I., Radersma, R., Santure, A.W., De Cauwer, I., Slate, J., Sheldon, B.C. (2015) No evidence for MHC class I based disassortative mating in a wild population of great tits. Journal of Evolutionary Biology 28: 642-654. https://doi.org/10.1111/jeb.12600
  1. Stapley, J., Santure, A.W. & Dennis, S.R. (2015) Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species. Molecular Ecology 24: 2241-2252. https://doi.org/10.1111/mec.13089
  1. Gossmann, T.I., Santure, A.W., Sheldon, B.C., Slate, J. & Zeng, K. (2014) Highly variable recombinational landscape modulates efficacy of natural selection in birds. Genome Biology and Evolution 6: 2061-2075. https://doi.org/10.1093/gbe/evu157
  1. van Oers, K.*, Santure, A.W.*, De Cauwer, I.*, van Bers, N.E.M., Crooijmans, R.P.M.A., Sheldon, B.C., Visser, M.E., Groenen, M.A.M. & Slate, J. (2014) Replicated high-density genetic maps of two great tit populations reveal fine-scale departures from sex-equal recombination rates. Heredity 112: 307-316. https://doi.org/10.1038/hdy.2013.107
  1. Schroeder, J.*, Dugdale, H.L.*, Radersma, R., Hinsch, M., Buehler, D.M., Saul, J., Porter, L., Liker, A., De Cauwer, I., Johnson, P.J., Santure, A.W., Griffin, A.S., Bolund, E., Ross, L., Webb, T.J., Feulner, P.G.D., Winney, I., Szulkin, M., Komdeur, J., Versteegh, M.A., Hemelrijk, C.K., Svensson, E.I., Edwards, H., Karlsson, M., West, S.A., Barrett, E.L.B., Richardson, D.S., van den Brink, V., Wimpenny, J.H., Ellwood, S.A., Rees, M., Matson, K.D., Charmantier, A., dos Remedios, N., Schneider, N.A., Teplitsky, C., Laurance, W.F., Butlin, R.K., Horrocks, N.P.C. (2013) Fewer invited talks by women in evolutionary biology symposia. Journal of Evolutionary Biology 26: 2063-2069. https://doi.org/10.1111/jeb.12198 Featured in a Science Insider article
  1. Robinson, M.R., Santure, A.W., De Cauwer, I., Sheldon, B.C. & Slate, J. (2013) Partitioning of genetic variation across the genome using multi-marker methods in a wild bird population. Molecular Ecology 22: 3963-3980. https://doi.org/10.1111/mec.12375

Jointly featured in a News and Views article in the same issue: https://doi.org/10.1111/mec.12401

  1. Santure, A.W.*, De Cauwer, I.*, Robinson, M.R., Sheldon, B.C., Poissant, J. & Slate, J. (2013) Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population. Molecular Ecology 22: 3949-3962. https://doi.org/10.1111/mec.12376

Jointly featured in a News and Views article in the same issue: https://doi.org/10.1111/mec.12401

  1. Garroway, C. J.*, Radersma, R.*, Sepil, I., Santure, A.W., De Cauwer, I., Slate, J. & Sheldon, B.C. (2013) Fine-scale genetic structure in a wild bird population: the role of limited dispersal and environmentally based selection as causal factors. Evolution 67: 3488-3500. https://doi.org/10.1111/evo.12121
  1. Santure, A.W. & Spencer, H.G. (2012) Genomic imprinting leads to less selectively maintained polymorphism on X chromosomes. Genetics 192: 1455-1464. https://doi.org/10.1534/genetics.112.145607
  1. van Bers, N.E.M.*, Santure, A.W.*, van Oers, K., De Cauwer, I., Dibbits, B.W., Mateman, C., Crooijmans, R.P.M.A., Sheldon, B.C., Visser, M.E., Groenen, M.A.M. & Slate, J. (2012) The design and cross-population application of a genome-wide SNP chip for the great tit Parus major. Molecular Ecology Resources 12: 753-770. https://doi.org/10.1111/j.1755-0998.2012.03141.x
  1. Santure, A.W. & Spencer, H.G. (2011) Quantitative genetics of genomic imprinting: a comparison of simple variance derivations, the effects of inbreeding, and response to selection. G3: Genes, Genomes, Genetics 1: 131-142. https://doi.org/10.1534/g3.111.000042
  1. Santure, A.W., Gratten, J., Mossman, J.A., Sheldon, B.C. & Slate, J. (2011) Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing. BMC Genomics 12: 283. https://doi.org/10.1186/1471-2164-12-283
  1. Brekke, P., Bennett, P.M., Santure, A.W. & Ewen, J.G. (2011) High genetic diversity in the remnant island population of hihi and the genetic consequences of re-introduction. Molecular Ecology 20: 29-45. https://doi.org/10.1111/j.1365-294X.2010.04923.x
  1. Slate, J., Santure, A.W., Feulner, P.G.D., Brown, E.A., Ball, A.D., Johnston, S.E. & Gratten, J. (2010) Genome mapping in intensively studied wild vertebrate populations. Trends in Genetics 26: 275-284. https://doi.org/10.1016/j.tig.2010.03.005
  1. Santure, A.W., Stapley, J., Ball, A.D., Birkhead, T.R., Burke, T. & Slate, J. (2010) On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs. Molecular Ecology 19: 1439-1451. https://doi.org/10.1111/j.1365-294X.2010.04554.x

Featured in a News and Views article in the same issue: https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-294X.2010.04555.x

  1. Santure, A.W., Ewen, J.G., Sicard, D., Roff, D.A. & Moller, A.P. (2010) Population structure in the barn swallow, Hirundo rustica: a comparison between neutral DNA markers and quantitative traits. Biological Journal of the Linnean Society 99: 306-314. https://doi.org/10.1111/j.1095-8312.2009.01366.x
  1. Wang, J. & Santure, A.W. (2009) Parentage and sibship inference from multi-locus genotype data under polygamy. Genetics 181: 1579-1591. https://doi.org/10.1534/genetics.108.100214
  1. Santure, A.W. & Wang, J. (2009) The joint effects of selection and dominance on the QSTFST contrast. Genetics 181: 259-276. https://doi.org/10.1534/genetics.108.097998
  1. Santure, A.W. & Spencer, H.G. (2006) Influence of Mom and Dad: Quantitative genetic models for maternal effects and genomic imprinting. Genetics 173: 2297-2361. https://doi.org/10.1534/genetics.105.049494

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s